IL_6N8O_144
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 6N8O|1|A|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N8O_144 not in the Motif Atlas
- Homologous match to IL_8C3A_482
- Geometric discrepancy: 0.1626
- The information below is about IL_8C3A_482
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_04395.1
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6N8O|1|A|U|1501
6N8O|1|A|C|1502
6N8O|1|A|A|1503
6N8O|1|A|A|1504
6N8O|1|A|C|1505
*
6N8O|1|A|G|1513
6N8O|1|A|G|1514
6N8O|1|A|A|1515
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain c
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L19-A
- Chain y
- 60S ribosomal protein L39
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