IL_6N9E_373

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUGU*GCGC

Length

9 nucleotides

Bulged bases

6N9E|1|2A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_373 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.3008

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

6N9E|1|2A|G|1031
6N9E|1|2A|A|1032
6N9E|1|2A|U|1033
6N9E|1|2A|G|1034
6N9E|1|2A|U|1035
*
6N9E|1|2A|G|1120
6N9E|1|2A|C|1121
6N9E|1|2A|G|1122
6N9E|1|2A|C|1123

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2H

50S Ribosomal Protein L6

Chain 2Q

50S Ribosomal Protein L16