IL_6N9E_374

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGCAAU*AGCG

Length

10 nucleotides

Bulged bases

6N9E|1|2A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9E_374 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.2239

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6N9E|1|2A|C|1318
6N9E|1|2A|G|1319
6N9E|1|2A|C|1320
6N9E|1|2A|A|1321
6N9E|1|2A|A|1322
6N9E|1|2A|U|1323
*
6N9E|1|2A|A|1331
6N9E|1|2A|G|1332
6N9E|1|2A|C|1333
6N9E|1|2A|G|1334

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S Ribosomal Protein L22

Chain 2X

50S Ribosomal Protein L23