IL_6N9F_312

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6N9F|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_312 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1169

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6N9F|1|2a|G|662
6N9F|1|2a|A|663
6N9F|1|2a|G|664
6N9F|1|2a|A|665
6N9F|1|2a|G|666
*
6N9F|1|2a|U|740
6N9F|1|2a|G|741
6N9F|1|2a|G|742
6N9F|1|2a|U|743

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S Ribosomal Protein S6

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18