IL_6ND5_086

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6ND5|1|1A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_086 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4366

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6ND5|1|1A|C|2129
6ND5|1|1A|U|2130
6ND5|1|1A|G|2131
6ND5|1|1A|U|2132
6ND5|1|1A|G|2133
6ND5|1|1A|A|2134
6ND5|1|1A|A|2135
6ND5|1|1A|C|2136
*
6ND5|1|1A|G|2155
6ND5|1|1A|G|2156
6ND5|1|1A|G|2157
6ND5|1|1A|A|2158
6ND5|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains