IL_6ND5_143
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 6ND5|1|1a|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_143 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.1092
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ND5|1|1a|G|662
6ND5|1|1a|A|663
6ND5|1|1a|G|664
6ND5|1|1a|A|665
6ND5|1|1a|G|666
*
6ND5|1|1a|U|740
6ND5|1|1a|G|741
6ND5|1|1a|G|742
6ND5|1|1a|U|743
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1f
- 30S ribosomal protein S6
- Chain 1o
- 30S ribosomal protein S15
- Chain 1r
- 30S ribosomal protein S18
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