IL_6ND6_293

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6ND6|1|2a|U|244, 6ND6|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND6_293 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1151

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6ND6|1|2a|C|242
6ND6|1|2a|A|243
6ND6|1|2a|U|244
6ND6|1|2a|C|245
6ND6|1|2a|A|246
6ND6|1|2a|G|247
*
6ND6|1|2a|C|277
6ND6|1|2a|G|278
6ND6|1|2a|A|279
6ND6|1|2a|C|280
6ND6|1|2a|G|281
6ND6|1|2a|A|282
6ND6|1|2a|C|283
6ND6|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17