3D structure

PDB id
6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.85 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ND6_305 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.1005
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_05821.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

6ND6|1|2a|U|580
6ND6|1|2a|G|581
6ND6|1|2a|U|582
6ND6|1|2a|A|583
6ND6|1|2a|G|584
*
6ND6|1|2a|U|757
6ND6|1|2a|G|758
6ND6|1|2a|A|759
6ND6|1|2a|G|760
6ND6|1|2a|G|761

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2l
30S ribosomal protein S12
Chain 2o
30S ribosomal protein S15
Chain 2q
30S ribosomal protein S17

Coloring options:


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