IL_6NDK_377
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UGAAGC*GUGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_377 not in the Motif Atlas
- Homologous match to IL_7A0S_018
- Geometric discrepancy: 0.1559
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_06136.2
- Basepair signature
- cWW-tHS-cWW-tHS-tSH-tSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
6NDK|1|YA|U|703
6NDK|1|YA|G|704
6NDK|1|YA|A|705
6NDK|1|YA|A|706
6NDK|1|YA|G|707
6NDK|1|YA|C|708
*
6NDK|1|YA|G|723
6NDK|1|YA|U|724
6NDK|1|YA|G|725
6NDK|1|YA|G|726
6NDK|1|YA|A|727
6NDK|1|YA|G|728
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YD
- 50S ribosomal protein L2
Coloring options: