3D structure

PDB id
6NQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6NQB|1|A|A|532, 6NQB|1|A|U|534, 6NQB|1|A|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NQB_023 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1976
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6NQB|1|A|G|515
6NQB|1|A|U|516
6NQB|1|A|G|517
6NQB|1|A|C|518
6NQB|1|A|C|519
6NQB|1|A|A|520
6NQB|1|A|G|521
*
6NQB|1|A|C|528
6NQB|1|A|G|529
6NQB|1|A|G|530
6NQB|1|A|U|531
6NQB|1|A|A|532
6NQB|1|A|A|533
6NQB|1|A|U|534
6NQB|1|A|A|535
6NQB|1|A|C|536

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain L
30S ribosomal protein S12

Coloring options:


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