IL_6NSH_021

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6NSH|1|QA|A|532, 6NSH|1|QA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1731

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6NSH|1|QA|G|515
6NSH|1|QA|U|516
6NSH|1|QA|G|517
6NSH|1|QA|C|518
6NSH|1|QA|C|519
6NSH|1|QA|A|520
6NSH|1|QA|G|521
*
6NSH|1|QA|C|528
6NSH|1|QA|G|529
6NSH|1|QA|G|530
6NSH|1|QA|U|531
6NSH|1|QA|A|532
6NSH|1|QA|A|533
6NSH|1|QA|U|534
6NSH|1|QA|A|535
6NSH|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12