IL_6NSH_076

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6NSH|1|RA|G|801, 6NSH|1|RA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_076 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.0844

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6NSH|1|RA|G|674
6NSH|1|RA|A|675
6NSH|1|RA|A|676
6NSH|1|RA|A|677
6NSH|1|RA|C|678
*
6NSH|1|RA|G|799
6NSH|1|RA|A|800
6NSH|1|RA|G|801
6NSH|1|RA|A|802
6NSH|1|RA|U|803
6NSH|1|RA|A|804
6NSH|1|RA|G|805
6NSH|1|RA|C|806

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15