IL_6NUO_020

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1342

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6NUO|1|QA|C|504
6NUO|1|QA|G|505
6NUO|1|QA|G|506
6NUO|1|QA|C|507
6NUO|1|QA|C|508
6NUO|1|QA|A|509
6NUO|1|QA|A|510
6NUO|1|QA|C|511
*
6NUO|1|QA|G|540
6NUO|1|QA|G|541

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QE

30S ribosomal protein S5

Chain QL

30S ribosomal protein S12