IL_6NUO_042

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

6NUO|1|QA|C|1200, 6NUO|1|QA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_042 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1296

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6NUO|1|QA|G|1057
6NUO|1|QA|G|1058
*
6NUO|1|QA|U|1199
6NUO|1|QA|C|1200
6NUO|1|QA|A|1201
6NUO|1|QA|G|1202
6NUO|1|QA|C|1203

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z