IL_6NUO_077

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6NUO|1|RA|G|848, 6NUO|1|RA|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_077 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.0905

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6NUO|1|RA|G|721
6NUO|1|RA|A|722
6NUO|1|RA|A|723
6NUO|1|RA|A|724
6NUO|1|RA|C|725
*
6NUO|1|RA|G|846
6NUO|1|RA|A|847
6NUO|1|RA|G|848
6NUO|1|RA|A|849
6NUO|1|RA|U|850
6NUO|1|RA|A|851
6NUO|1|RA|G|852
6NUO|1|RA|C|853

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15