IL_6NUO_105

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6NUO|1|RA|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_105 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1163

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6NUO|1|RA|C|1253
6NUO|1|RA|G|1254
6NUO|1|RA|A|1255
6NUO|1|RA|U|1256
6NUO|1|RA|G|1257
6NUO|1|RA|A|1258
6NUO|1|RA|A|1259
6NUO|1|RA|G|1260
*
6NUO|1|RA|U|1280
6NUO|1|RA|G|1281
6NUO|1|RA|G|1282
6NUO|1|RA|A|1283
6NUO|1|RA|G|1284

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20