3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NUO_201 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.2213
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04211.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6NUO|1|XA|U|605
6NUO|1|XA|G|606
6NUO|1|XA|A|607
6NUO|1|XA|A|608
6NUO|1|XA|A|609
6NUO|1|XA|G|610
6NUO|1|XA|A|611
6NUO|1|XA|C|612
*
6NUO|1|XA|G|628
6NUO|1|XA|G|629
6NUO|1|XA|G|630
6NUO|1|XA|G|631
6NUO|1|XA|A|632
6NUO|1|XA|G|633

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XD
30S ribosomal protein S4
Chain XH
30S ribosomal protein S8
Chain XP
30S ribosomal protein S16

Coloring options:


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