3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
6NUO|1|XA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NUO_206 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1183
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

6NUO|1|XA|G|683
6NUO|1|XA|A|684
6NUO|1|XA|G|685
6NUO|1|XA|U|686
6NUO|1|XA|A|687
6NUO|1|XA|G|688
*
6NUO|1|XA|C|699
6NUO|1|XA|G|700
6NUO|1|XA|C|701
6NUO|1|XA|A|702
6NUO|1|XA|G|703
6NUO|1|XA|A|704
6NUO|1|XA|U|705
6NUO|1|XA|A|706
6NUO|1|XA|C|707

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XK
30S ribosomal protein S11
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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