3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
6NUO|1|YA|U|529, 6NUO|1|YA|G|533
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NUO_250 not in the Motif Atlas
Geometric match to IL_7RQB_014
Geometric discrepancy: 0.0587
The information below is about IL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.6
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

6NUO|1|YA|G|507
6NUO|1|YA|A|508
6NUO|1|YA|A|509
6NUO|1|YA|C|510
*
6NUO|1|YA|G|521
6NUO|1|YA|A|522
6NUO|1|YA|G|523
6NUO|1|YA|U|524
6NUO|1|YA|G|525
6NUO|1|YA|A|526
6NUO|1|YA|A|527
6NUO|1|YA|A|528
6NUO|1|YA|U|529
6NUO|1|YA|A|530
6NUO|1|YA|G|531
6NUO|1|YA|A|532
6NUO|1|YA|G|533
6NUO|1|YA|C|534

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YW
50S ribosomal protein L22
Chain YY
50S ribosomal protein L24

Coloring options:


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