IL_6NUO_338

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6NUO|1|YA|G|2793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_338 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0788

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6NUO|1|YA|U|2648
6NUO|1|YA|U|2649
6NUO|1|YA|G|2650
6NUO|1|YA|A|2651
6NUO|1|YA|G|2652
*
6NUO|1|YA|C|2787
6NUO|1|YA|A|2788
6NUO|1|YA|A|2789
6NUO|1|YA|G|2790
6NUO|1|YA|A|2791
6NUO|1|YA|U|2792
6NUO|1|YA|G|2793
6NUO|1|YA|A|2794
6NUO|1|YA|G|2795

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YN

50S ribosomal protein L13