IL_6NUO_354

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_354 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2844

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6NUO|1|YB|U|80
6NUO|1|YB|G|81
6NUO|1|YB|G|82
*
6NUO|1|YB|U|95
6NUO|1|YB|G|96
6NUO|1|YB|G|97

Current chains

Chain YB

5S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25