IL_6NUO_374

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_374 not in the Motif Atlas

Homologous match to IL_7A0S_111

Geometric discrepancy: 0.2029

The information below is about IL_7A0S_111

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6NUO|1|YA|U|905
6NUO|1|YA|G|906
6NUO|1|YA|U|907
6NUO|1|YA|A|908
6NUO|1|YA|G|909
*
6NUO|1|YA|C|961
6NUO|1|YA|G|962
6NUO|1|YA|A|963
6NUO|1|YA|A|964
6NUO|1|YA|G|965

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YQ

50S ribosomal protein L16