IL_6NWY_194

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6NWY|1|XA|A|532, 6NWY|1|XA|U|534, 6NWY|1|XA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_194 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1775

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6NWY|1|XA|G|515
6NWY|1|XA|U|516
6NWY|1|XA|G|517
6NWY|1|XA|C|518
6NWY|1|XA|C|519
6NWY|1|XA|A|520
6NWY|1|XA|G|521
*
6NWY|1|XA|C|528
6NWY|1|XA|G|529
6NWY|1|XA|G|530
6NWY|1|XA|U|531
6NWY|1|XA|A|532
6NWY|1|XA|A|533
6NWY|1|XA|U|534
6NWY|1|XA|A|535
6NWY|1|XA|C|536

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12