IL_6NWY_202

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6NWY|1|XA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_202 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1242

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6NWY|1|XA|G|662
6NWY|1|XA|A|663
6NWY|1|XA|G|664
6NWY|1|XA|A|665
6NWY|1|XA|G|666
*
6NWY|1|XA|U|740
6NWY|1|XA|G|741
6NWY|1|XA|G|742
6NWY|1|XA|U|743

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XO

30S ribosomal protein S15

Chain XR

30S ribosomal protein S18