IL_6NWY_362

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

6NWY|1|RA|C|2111, 6NWY|1|RA|A|2114, 6NWY|1|RA|A|2117, 6NWY|1|RA|U|2118, 6NWY|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_362 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2968

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6NWY|1|RA|C|2108
6NWY|1|RA|U|2109
6NWY|1|RA|G|2110
6NWY|1|RA|C|2111
6NWY|1|RA|G|2112
6NWY|1|RA|U|2113
6NWY|1|RA|A|2114
6NWY|1|RA|G|2115
6NWY|1|RA|G|2116
6NWY|1|RA|A|2117
6NWY|1|RA|U|2118
6NWY|1|RA|A|2119
6NWY|1|RA|G|2120
*
6NWY|1|RA|C|2178
6NWY|1|RA|C|2179
6NWY|1|RA|U|2180
6NWY|1|RA|G|2181

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA