IL_6NY6_021
3D structure
- PDB id
- 6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6NY6|1|A|A|532, 6NY6|1|A|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NY6_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.187
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6NY6|1|A|G|515
6NY6|1|A|U|516
6NY6|1|A|G|517
6NY6|1|A|C|518
6NY6|1|A|C|519
6NY6|1|A|A|520
6NY6|1|A|G|521
*
6NY6|1|A|C|528
6NY6|1|A|G|529
6NY6|1|A|G|530
6NY6|1|A|U|531
6NY6|1|A|A|532
6NY6|1|A|A|533
6NY6|1|A|U|534
6NY6|1|A|A|535
6NY6|1|A|C|536
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain L
- 30S ribosomal protein S12
- Chain Y
- Toxin YoeB
Coloring options: