IL_6O3M_011

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6O3M|1|QA|U|244, 6O3M|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0909

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6O3M|1|QA|C|242
6O3M|1|QA|A|243
6O3M|1|QA|U|244
6O3M|1|QA|C|245
6O3M|1|QA|A|246
6O3M|1|QA|G|247
*
6O3M|1|QA|C|277
6O3M|1|QA|G|278
6O3M|1|QA|A|279
6O3M|1|QA|C|280
6O3M|1|QA|G|281
6O3M|1|QA|A|282
6O3M|1|QA|C|283
6O3M|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17