IL_6O3M_021

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6O3M|1|QA|A|532, 6O3M|1|QA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1961

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6O3M|1|QA|G|515
6O3M|1|QA|U|516
6O3M|1|QA|G|517
6O3M|1|QA|C|518
6O3M|1|QA|C|519
6O3M|1|QA|A|520
6O3M|1|QA|G|521
*
6O3M|1|QA|C|528
6O3M|1|QA|G|529
6O3M|1|QA|G|530
6O3M|1|QA|U|531
6O3M|1|QA|A|532
6O3M|1|QA|A|533
6O3M|1|QA|U|534
6O3M|1|QA|A|535
6O3M|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12