IL_6O7K_063

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O7K_063 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6O7K|1|g|A|1430
6O7K|1|g|A|1431
6O7K|1|g|G|1432
6O7K|1|g|A|1433
6O7K|1|g|A|1434
6O7K|1|g|G|1435
*
6O7K|1|g|C|1466
6O7K|1|g|C|1467
6O7K|1|g|A|1468
6O7K|1|g|C|1469
6O7K|1|g|U|1470

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20