IL_6O8W_039

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6O8W|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_039 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6O8W|1|A|U|1058
6O8W|1|A|U|1059
6O8W|1|A|A|1060
6O8W|1|A|A|1061
6O8W|1|A|G|1062
6O8W|1|A|U|1063
6O8W|1|A|G|1064
*
6O8W|1|A|C|1180
6O8W|1|A|U|1181
6O8W|1|A|A|1182
6O8W|1|A|A|1183
6O8W|1|A|A|1184

Current chains

Chain A

50S subunit

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13