IL_6O8W_166

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUCG*CAAAUC

Length

10 nucleotides

Bulged bases

6O8W|1|a|C|1272, 6O8W|1|a|A|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_166 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2163

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6O8W|1|a|G|1270
6O8W|1|a|U|1271
6O8W|1|a|C|1272
6O8W|1|a|G|1273
*
6O8W|1|a|C|1292
6O8W|1|a|A|1293
6O8W|1|a|A|1294
6O8W|1|a|A|1295
6O8W|1|a|U|1296
6O8W|1|a|C|1297

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z