IL_6O8W_175

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_175 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.1552

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6O8W|1|a|U|1439
6O8W|1|a|A|1440
6O8W|1|a|A|1441
6O8W|1|a|C|1442
*
6O8W|1|a|G|1489
6O8W|1|a|G|1490
6O8W|1|a|G|1491
6O8W|1|a|A|1492

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain L

50S ribosomal protein L14