IL_6O8Z_138
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6O8Z|1|a|A|547, 6O8Z|1|a|U|549, 6O8Z|1|a|A|550
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6O8Z_138 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1967
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6O8Z|1|a|G|530
6O8Z|1|a|U|531
6O8Z|1|a|G|532
6O8Z|1|a|C|533
6O8Z|1|a|C|534
6O8Z|1|a|A|535
6O8Z|1|a|G|536
*
6O8Z|1|a|C|543
6O8Z|1|a|G|544
6O8Z|1|a|G|545
6O8Z|1|a|U|546
6O8Z|1|a|A|547
6O8Z|1|a|A|548
6O8Z|1|a|U|549
6O8Z|1|a|A|550
6O8Z|1|a|C|551
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: