IL_6O90_015

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAUC

Length

18 nucleotides

Bulged bases

6O90|1|A|U|543, 6O90|1|A|U|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_015 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.138

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

6O90|1|A|G|521
6O90|1|A|C|522
6O90|1|A|A|523
6O90|1|A|C|524
*
6O90|1|A|G|535
6O90|1|A|A|536
6O90|1|A|G|537
6O90|1|A|U|538
6O90|1|A|G|539
6O90|1|A|A|540
6O90|1|A|A|541
6O90|1|A|A|542
6O90|1|A|U|543
6O90|1|A|A|544
6O90|1|A|G|545
6O90|1|A|A|546
6O90|1|A|U|547
6O90|1|A|C|548

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24