IL_6O90_028

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AAUUGA*UAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_028 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.3913

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6O90|1|A|A|883
6O90|1|A|A|884
6O90|1|A|U|885
6O90|1|A|U|886
6O90|1|A|G|887
6O90|1|A|A|888
*
6O90|1|A|U|973
6O90|1|A|A|974
6O90|1|A|U|975

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L30