IL_6O90_070

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6O90|1|A|A|1913, 6O90|1|A|A|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_070 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.1173

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6O90|1|A|U|1855
6O90|1|A|G|1856
*
6O90|1|A|U|1912
6O90|1|A|A|1913
6O90|1|A|A|1914
6O90|1|A|A|1915

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2