IL_6O90_085

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6O90|1|A|U|2125, 6O90|1|A|A|2126, 6O90|1|A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_085 not in the Motif Atlas

Geometric match to IL_7A0S_097

Geometric discrepancy: 0.2083

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6O90|1|A|G|2124
6O90|1|A|U|2125
6O90|1|A|A|2126
6O90|1|A|C|2127
6O90|1|A|A|2128
6O90|1|A|G|2129
6O90|1|A|G|2130
6O90|1|A|A|2131
6O90|1|A|U|2132
6O90|1|A|A|2133
6O90|1|A|G|2134
*
6O90|1|A|C|2192
6O90|1|A|C|2193

Current chains

Chain A

23S rRNA

Nearby chains