IL_6O90_125

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6O90|1|a|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_125 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.4547

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6O90|1|a|G|153
6O90|1|a|G|154
6O90|1|a|A|155
6O90|1|a|U|156
6O90|1|a|A|157
6O90|1|a|A|158
6O90|1|a|C|159
*
6O90|1|a|G|174
6O90|1|a|C|175
6O90|1|a|U|176
6O90|1|a|A|177
6O90|1|a|A|178
6O90|1|a|U|179
6O90|1|a|A|180
6O90|1|a|C|181

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20