IL_6O97_243

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6O97|1|2A|A|1938, 6O97|1|2A|U|1944, 6O97|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O97_243 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1478

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6O97|1|2A|C|1934
6O97|1|2A|G|1935
6O97|1|2A|A|1936
6O97|1|2A|A|1937
6O97|1|2A|A|1938
6O97|1|2A|5MU|1939
6O97|1|2A|U|1940
6O97|1|2A|C|1941
6O97|1|2A|5MC|1942
6O97|1|2A|U|1943
6O97|1|2A|U|1944
6O97|1|2A|G|1945
*
6O97|1|2A|C|1961
6O97|1|2A|5MC|1962
6O97|1|2A|U|1963
6O97|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA