IL_6O9J_072

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6O9J|1|B|A|1801, 6O9J|1|B|C|1816, 6O9J|1|B|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_072 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.064

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6O9J|1|B|U|1798
6O9J|1|B|G|1799
6O9J|1|B|C|1800
6O9J|1|B|A|1801
6O9J|1|B|A|1802
6O9J|1|B|A|1803
6O9J|1|B|C|1804
*
6O9J|1|B|G|1813
6O9J|1|B|G|1814
6O9J|1|B|A|1815
6O9J|1|B|C|1816
6O9J|1|B|G|1817
6O9J|1|B|U|1818
6O9J|1|B|A|1819
6O9J|1|B|U|1820
6O9J|1|B|A|1821

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA