3D structure

PDB id
6O9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Elongation Competent Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
6O9J|1|a|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O9J_142 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0848
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6O9J|1|a|U|605
6O9J|1|a|G|606
6O9J|1|a|A|607
6O9J|1|a|A|608
6O9J|1|a|A|609
6O9J|1|a|U|610
6O9J|1|a|C|611
6O9J|1|a|C|612
*
6O9J|1|a|G|628
6O9J|1|a|A|629
6O9J|1|a|A|630
6O9J|1|a|C|631
6O9J|1|a|U|632
6O9J|1|a|G|633

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain h
30S ribosomal protein S8
Chain p
30S ribosomal protein S16
Chain q
30S ribosomal protein S17

Coloring options:


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