IL_6O9K_066

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_066 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.3149

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6O9K|1|A|G|1719
6O9K|1|A|U|1720
6O9K|1|A|G|1721
6O9K|1|A|A|1722
6O9K|1|A|G|1723
6O9K|1|A|G|1724
*
6O9K|1|A|U|1736
6O9K|1|A|G|1737
6O9K|1|A|G|1738
6O9K|1|A|A|1739
6O9K|1|A|G|1740
6O9K|1|A|C|1741

Current chains

Chain A

23S rRNA

Nearby chains