IL_6OD9_004
3D structure
- PDB id
- 6OD9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.1 Å
Loop
- Sequence
- CUGACGGAACG*CAUG
- Length
- 15 nucleotides
- Bulged bases
- 6OD9|1|B|A|22, 6OD9|1|B|A|23, 6OD9|1|B|C|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OD9_004 not in the Motif Atlas
- Geometric match to IL_5BTP_005
- Geometric discrepancy: 0.1387
- The information below is about IL_5BTP_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69271.3
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
6OD9|1|B|C|15
6OD9|1|B|U|16
6OD9|1|B|G|17
6OD9|1|B|A|18
6OD9|1|B|C|19
6OD9|1|B|G|20
6OD9|1|B|G|21
6OD9|1|B|A|22
6OD9|1|B|A|23
6OD9|1|B|C|24
6OD9|1|B|G|25
*
6OD9|1|B|C|38
6OD9|1|B|A|39
6OD9|1|B|U|40
6OD9|1|B|G|41
Current chains
- Chain B
- RNA (75-MER)
Nearby chains
- Chain A
- ZMP/ZTP riboswitch
Coloring options: