IL_6OF1_049
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAUG*CAGC
- Length
- 10 nucleotides
- Bulged bases
- 6OF1|1|1A|G|1332
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OF1_049 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3843
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6OF1|1|1A|G|1319
6OF1|1|1A|C|1320
6OF1|1|1A|A|1321
6OF1|1|1A|A|1322
6OF1|1|1A|U|1323
6OF1|1|1A|G|1324
*
6OF1|1|1A|C|1330
6OF1|1|1A|A|1331
6OF1|1|1A|G|1332
6OF1|1|1A|C|1333
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1X
- 50S ribosomal protein L23
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