IL_6OFX_141

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

6OFX|1|3|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_141 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.2094

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6OFX|1|3|U|605
6OFX|1|3|G|606
6OFX|1|3|A|607
6OFX|1|3|A|608
6OFX|1|3|A|609
6OFX|1|3|U|610
6OFX|1|3|C|611
6OFX|1|3|C|612
*
6OFX|1|3|G|628
6OFX|1|3|A|629
6OFX|1|3|A|630
6OFX|1|3|C|631
6OFX|1|3|U|632
6OFX|1|3|G|633

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain M

30S ribosomal protein S8

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17