3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
6OGF|1|3|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGF_142 not in the Motif Atlas
Homologous match to IL_4LFB_029
Geometric discrepancy: 0.2007
The information below is about IL_4LFB_029
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6OGF|1|3|U|662
6OGF|1|3|A|663
6OGF|1|3|G|664
6OGF|1|3|A|665
6OGF|1|3|G|666
*
6OGF|1|3|U|740
6OGF|1|3|G|741
6OGF|1|3|G|742
6OGF|1|3|A|743

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S6
Chain T
30S ribosomal protein S15
Chain W
30S ribosomal protein S18
Chain Z
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.134 s