3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UCCCAAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_033 not in the Motif Atlas
Homologous match to IL_4WF9_037
Geometric discrepancy: 0.2123
The information below is about IL_4WF9_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

6OGG|1|1|U|1004
6OGG|1|1|C|1005
6OGG|1|1|C|1006
6OGG|1|1|C|1007
6OGG|1|1|A|1008
6OGG|1|1|A|1009
6OGG|1|1|A|1010
6OGG|1|1|G|1011
*
6OGG|1|1|C|1150
6OGG|1|1|A|1151

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1341 s