IL_6OGG_053

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6OGG|1|1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_053 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.3973

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OGG|1|1|C|1437
6OGG|1|1|U|1438
6OGG|1|1|A|1439
6OGG|1|1|U|1440
*
6OGG|1|1|A|1551
6OGG|1|1|A|1552
6OGG|1|1|A|1553
6OGG|1|1|U|1554
6OGG|1|1|G|1555

Current chains

Chain 1

23S ribosomal RNA

Nearby chains