IL_6OGG_058
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGAGG*CUGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGG_058 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.357
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OGG|1|1|C|1526
6OGG|1|1|G|1527
6OGG|1|1|A|1528
6OGG|1|1|G|1529
6OGG|1|1|G|1530
*
6OGG|1|1|C|1541
6OGG|1|1|U|1542
6OGG|1|1|G|1543
6OGG|1|1|A|1544
6OGG|1|1|A|1545
6OGG|1|1|G|1546
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: