3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGAGG*CCGACCUUGAAAUAC
Length
20 nucleotides
Bulged bases
6OGG|1|1|G|2127, 6OGG|1|1|C|2161, 6OGG|1|1|C|2164, 6OGG|1|1|G|2168, 6OGG|1|1|U|2172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_080 not in the Motif Atlas
Homologous match to IL_5J7L_329
Geometric discrepancy: 0.4927
The information below is about IL_5J7L_329
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_87290.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
Number of instances in this motif group
1

Unit IDs

6OGG|1|1|G|2124
6OGG|1|1|G|2125
6OGG|1|1|A|2126
6OGG|1|1|G|2127
6OGG|1|1|G|2128
*
6OGG|1|1|C|2160
6OGG|1|1|C|2161
6OGG|1|1|G|2162
6OGG|1|1|A|2163
6OGG|1|1|C|2164
6OGG|1|1|C|2165
6OGG|1|1|U|2166
6OGG|1|1|U|2167
6OGG|1|1|G|2168
6OGG|1|1|A|2169
6OGG|1|1|A|2170
6OGG|1|1|A|2171
6OGG|1|1|U|2172
6OGG|1|1|A|2173
6OGG|1|1|C|2174

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:


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